Remove binary files and prepare .gitignore

.gitignore

@@ -1,6 +1,21 @@
-*/bin/*
+# Eclipse project excludes
 *.project
 *.classpath
 *.pdf
 *.doc
 
+# Output excludes
+bin/
+doc/
+
+# matlab excludes
+*.m~
+
+# LaTeX excludes
+*.aux
+*.lof
+*.toc
+*.gz
+*.out
+*.lot
+report/**/*.log