AUTH's THMMY "Parallel and distributed systems" course assignments.
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utils.hpp 7.8 KiB

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  1. /**
  2. * \file utils.hpp
  3. * \brief Utilities header
  4. *
  5. * \author
  6. * Christos Choutouridis AEM:8997
  7. * <cchoutou@ece.auth.gr>
  8. */
  9. #ifndef UTILS_HPP_
  10. #define UTILS_HPP_
  11. #include <iostream>
  12. #include <chrono>
  13. #include <unistd.h>
  14. #include <hdf5.h>
  15. #include <matrix.hpp>
  16. #include <config.h>
  17. /*!
  18. * A Logger for entire program.
  19. */
  20. struct Log {
  21. struct Endl {} endl; //!< a tag object to to use it as a new line request.
  22. //! We provide logging via << operator
  23. template<typename T>
  24. Log& operator<< (T&& t) {
  25. if (session.verbose) {
  26. if (line_) {
  27. std::cout << "[Log]: " << t;
  28. line_ = false;
  29. }
  30. else
  31. std::cout << t;
  32. }
  33. return *this;
  34. }
  35. // overload for special end line handling
  36. Log& operator<< (Endl e) { (void)e;
  37. if (session.verbose) {
  38. std::cout << '\n';
  39. line_ = true;
  40. }
  41. return *this;
  42. }
  43. private:
  44. bool line_ {true};
  45. };
  46. extern Log logger;
  47. /*!
  48. * A small timing utility based on chrono.
  49. */
  50. struct Timing{
  51. using Tpoint = std::chrono::steady_clock::time_point;
  52. using microseconds = std::chrono::microseconds;
  53. using milliseconds = std::chrono::milliseconds;
  54. using seconds = std::chrono::seconds;
  55. //! tool to mark the starting point
  56. Tpoint start () noexcept { return start_ = std::chrono::steady_clock::now(); }
  57. //! tool to mark the ending point
  58. Tpoint stop () noexcept { return stop_ = std::chrono::steady_clock::now(); }
  59. auto dt () noexcept {
  60. return std::chrono::duration_cast<std::chrono::microseconds>(stop_ - start_).count();
  61. }
  62. //! tool to print the time interval
  63. void print_dt (const char* what) noexcept {
  64. if (session.timing) {
  65. auto t = stop_ - start_;
  66. if (std::chrono::duration_cast<microseconds>(t).count() < 10000)
  67. std::cout << "[Timing]: " << what << ": " << std::to_string(std::chrono::duration_cast<microseconds>(t).count()) << " [usec]\n";
  68. else if (std::chrono::duration_cast<milliseconds>(t).count() < 10000)
  69. std::cout << "[Timing]: " << what << ": " << std::to_string(std::chrono::duration_cast<milliseconds>(t).count()) << " [msec]\n";
  70. else
  71. std::cout << "[Timing]: " << what << ": " << std::to_string(std::chrono::duration_cast<seconds>(t).count()) << " [sec]\n";
  72. }
  73. }
  74. private:
  75. Tpoint start_;
  76. Tpoint stop_;
  77. };
  78. struct Mtx {
  79. template<typename MatrixType, HDF5_type Type>
  80. static void load(const std::string& filename, const std::string& dataset, MatrixType& matrix) {
  81. hid_t file_id{}, dataset_id{}, dataspace_id{};
  82. herr_t read_st;
  83. do {
  84. // Open file
  85. logger << "Load HDF5 file: " << filename << " Dataset: " << dataset << "...";
  86. if ((file_id = H5Fopen(filename.c_str(), H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
  87. break;
  88. // Open dataset
  89. if ((dataset_id = H5Dopen2(file_id, dataset.c_str(), H5P_DEFAULT)) < 0)
  90. break;
  91. // Get dataspace and allocate memory for read buffer
  92. if ((dataspace_id = H5Dget_space(dataset_id)) < 0)
  93. break;
  94. hsize_t dims[2];
  95. H5Sget_simple_extent_dims(dataspace_id, dims, NULL);
  96. matrix.resize(dims[0], dims[1]);
  97. // Read the dataset
  98. // ToDo: Come up with a better way to do this
  99. if constexpr (Type == HDF5_type::DOUBLE) {
  100. if ((read_st = H5Dread(dataset_id, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) < 0)
  101. break;
  102. }
  103. else if (Type == HDF5_type::FLOAT) {
  104. if ((read_st = H5Dread(dataset_id, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) < 0)
  105. break;
  106. }
  107. else if (Type == HDF5_type::UINT) {
  108. if ((read_st = H5Dread(dataset_id, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) < 0)
  109. break;
  110. }
  111. else if (Type == HDF5_type::INT) {
  112. if ((read_st = H5Dread(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) < 0)
  113. break;
  114. }
  115. // Done
  116. H5Dclose(dataset_id);
  117. H5Sclose(dataspace_id);
  118. H5Fclose(file_id);
  119. logger << " Done" << logger.endl;
  120. return;
  121. } while (0);
  122. // Error: close everything (if possible) and return false
  123. H5Dclose(dataset_id);
  124. H5Sclose(dataspace_id);
  125. H5Fclose(file_id);
  126. throw std::runtime_error("Cannot store to " + filename + " dataset:" + dataset + '\n');
  127. }
  128. template<typename MatrixType, HDF5_type Type>
  129. static void store(const std::string& filename, const std::string& dataset, MatrixType& matrix) {
  130. hid_t file_id{}, dataset_id{}, dataspace_id{};
  131. herr_t write_st;
  132. do {
  133. // Try to open the file in read-write mode
  134. logger << "Store HDF5 file: " << filename << " Dataset: " << dataset << "...";
  135. if (access(session.outMtxFile.c_str(), F_OK) == 0){
  136. if ((file_id = H5Fopen(filename.c_str(), H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
  137. break;
  138. }
  139. else {
  140. if ((file_id = H5Fcreate(filename.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
  141. break;
  142. }
  143. // Create the dataspace for the dataset
  144. hsize_t dims[] = { matrix.rows(), matrix.columns() };
  145. if ((dataspace_id = H5Screate_simple(2, dims, NULL)) < 0)
  146. break;
  147. // ToDo: Come up with a better way to do this
  148. if constexpr (Type == HDF5_type::DOUBLE) {
  149. // Create the dataset with default properties
  150. if ((dataset_id = H5Dcreate2(
  151. file_id, dataset.c_str(), H5T_NATIVE_DOUBLE, dataspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
  152. break;
  153. // Write the data to the dataset
  154. if ((write_st = H5Dwrite(dataset_id, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) <0 )
  155. break;
  156. }
  157. else if (Type == HDF5_type::FLOAT) {
  158. // Create the dataset with default properties
  159. if ((dataset_id = H5Dcreate2(
  160. file_id, dataset.c_str(), H5T_NATIVE_FLOAT, dataspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
  161. break;
  162. // Write the data to the dataset
  163. if ((write_st = H5Dwrite(dataset_id, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) <0 )
  164. break;
  165. }
  166. else if (Type == HDF5_type::UINT) {
  167. // Create the dataset with default properties
  168. if ((dataset_id = H5Dcreate2(
  169. file_id, dataset.c_str(), H5T_NATIVE_UINT, dataspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
  170. break;
  171. // Write the data to the dataset
  172. if ((write_st = H5Dwrite(dataset_id, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) <0 )
  173. break;
  174. }
  175. else if (Type == HDF5_type::INT) {
  176. // Create the dataset with default properties
  177. if ((dataset_id = H5Dcreate2(
  178. file_id, dataset.c_str(), H5T_NATIVE_INT, dataspace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
  179. break;
  180. // Write the data to the dataset
  181. if ((write_st = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, matrix.data())) <0 )
  182. break;
  183. }
  184. // Close the dataset, dataspace, and file
  185. H5Dclose(dataset_id);
  186. H5Sclose(dataspace_id);
  187. H5Fclose(file_id);
  188. logger << " Done" << logger.endl;
  189. return;
  190. } while (0);
  191. // Error: close everything (if possible) and return false
  192. H5Dclose(dataset_id);
  193. H5Sclose(dataspace_id);
  194. H5Fclose(file_id);
  195. throw std::runtime_error("Cannot store " + filename + " with dataset:" + dataset +'\n');
  196. }
  197. };
  198. #endif /* UTILS_HPP_ */